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Forum: Bioinformatics 08-10-2008, 08:15 PM
Replies: 236
Views: 586,201
Posted By spirit
Hi, Anthony, Sorry for the late reply. I...

Hi, Anthony,

Sorry for the late reply. I was out for weekend. You are THE Anthony Fejes! Your blog enlightened us a lot!!! Thank you! We like it. :)

The results on the benchmark above were...
Forum: Bioinformatics 08-08-2008, 03:39 PM
Replies: 236
Views: 586,201
Posted By spirit
Thank you for your interest. I will answer these...

Thank you for your interest. I will answer these questions as I could.

1. What are the longest and shortest reads it can handle effectively?

Now, ZOOM could handle reads of length ranging from...
Forum: Bioinformatics 08-08-2008, 01:31 PM
Replies: 236
Views: 586,201
Posted By spirit
And may I ask a question? What is the pair-end...

And may I ask a question? What is the pair-end data of Illumina/Solexa data like? ZOOM now accepts two types of pair-end reads input. One is two fasta input files recording reads from two ends...
Forum: Bioinformatics 08-08-2008, 01:23 PM
Replies: 236
Views: 586,201
Posted By spirit
Hi, lh3 and apfejes. Thanks for you opinion on...

Hi, lh3 and apfejes. Thanks for you opinion on ZOOM :). I am one of the developers of ZOOM. In fact, we will release the command-line version of ZOOM next week.

We finished the part of ZOOM...
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