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Forum: Bioinformatics 06-19-2013, 11:43 AM
Replies: 1
Views: 2,437
Posted By kai3192
Exclamation DBD::mysql::st execute failed

I am using orthomcl... and currently encountering a error at step 9 (orthomclLoadBlast)... the error says 'DBD::mysql::st execute failed: The used command is not allowed with this MySQL version at...
Forum: Bioinformatics 06-17-2013, 01:35 PM
Replies: 30
Views: 10,318
Posted By kai3192
I am using ubuntu.... and I have installed MySQL...

I am using ubuntu.... and I have installed MySQL version 5.5 server.... I aslo tried reinstalling by building the source and then typing DENABLED--local-infile=1 while using the c-make command...
...
Forum: Bioinformatics 06-17-2013, 08:24 AM
Replies: 30
Views: 10,318
Posted By kai3192
Thank you so much... It just worked and I was...

Thank you so much... It just worked and I was able to run the OrthomclInstallSchema....

BUT NOW I am getting an error in the 9th step orthomclLoadBlast saying 'DBD::mysql::st execute failed: The...
Forum: Bioinformatics 06-17-2013, 08:10 AM
Replies: 30
Views: 10,318
Posted By kai3192
I was able to connect to the database using...

I was able to connect to the database using commandline using the user root, but not using the user kaivalya3192
Forum: Bioinformatics 06-17-2013, 08:01 AM
Replies: 30
Views: 10,318
Posted By kai3192
does this mean that the Daemon is working ??

does this mean that the Daemon is working ??
Forum: Bioinformatics 06-17-2013, 07:52 AM
Replies: 30
Views: 10,318
Posted By kai3192
When I use the script u just gave me it says ...

When I use the script u just gave me it says

mysql 1033 0.0 0.5 492532 43256 ? Ssl 10:21 0:02 /usr/sbin/mysqld
1000 5070 0.0 0.0 8108 924 pts/1 R+ 21:19 0:00...
Forum: Bioinformatics 06-17-2013, 07:12 AM
Replies: 30
Views: 10,318
Posted By kai3192
I should create a config file in orthomcl means...

I should create a config file in orthomcl means that I need to edit the preexisting file orthomcl.config.template right ??
I did edit that and entered the same database name and password as for the...
Forum: Bioinformatics 06-14-2013, 01:22 PM
Replies: 30
Views: 10,318
Posted By kai3192
Exclamation ERROR in DBI connect orthomclInstallSchema

Hello,
I am using orthomcl ... at the step 5 (orthomclInstallSchema) in the manual (http://orthomcl.org/common/downloads/software/v2.0/UserGuide.txt) it gives me an error saying 'DBI...
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