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Search: Posts Made By: shubk
Forum: Bioinformatics 12-31-2018, 01:32 AM
Replies: 1
Views: 1,461
Posted By shubk
How to start a new column after every nth row?

Hi have a file(comma separated) with 3 columns. I want to start new column after every 4th row
Input:
col1,col2,col3
1,disease1,high
1,disease2,low
1,disease3,high
col1,col2,col3...
Forum: Bioinformatics 10-29-2018, 02:43 AM
Replies: 0
Views: 1,087
Posted By shubk
How do I read a variable from a text file in shell?

I want to insert in my script a value (string) that I would read from a text file.

For example: I have shell script
#!/bin/bash
echo "Enter your name:"
read name
echo "...and now your age:"...
Forum: Bioinformatics 08-24-2018, 02:56 AM
Replies: 5
Views: 1,398
Posted By shubk
It does have a Beta/OR value for each SNP. Can...

It does have a Beta/OR value for each SNP. Can this value be used instead of effect size?
Forum: Bioinformatics 08-24-2018, 02:06 AM
Replies: 5
Views: 1,398
Posted By shubk
Thank you. I have downloaded association results...

Thank you. I have downloaded association results from GWAS. The file has all required columns except effect size estimates, is there is any way to calculate it ? or is PRSice can run without effect...
Forum: Bioinformatics 08-22-2018, 05:25 PM
Replies: 5
Views: 1,398
Posted By shubk
Base file of PRSice software

I am using PRSice software for Polygenic risk score calculation of complex diseases like Type 2 Diabetes, Coronary artery disease. Input files required for analysis are Base file (example:...
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