Forum: 454 Pyrosequencing
12-04-2011, 03:22 AM
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Replies: 6
Views: 3,789
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Forum: Bioinformatics
05-25-2011, 05:37 AM
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Replies: 22
Views: 11,312
Is there any limitation to the input sequence...
Is there any limitation to the input sequence size into CAP3.
I want to combine assemblies from 454 and illumina using CAP3. However I find most of the contigs in singleton_file generated by cap3....
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Forum: Bioinformatics
02-16-2011, 08:58 PM
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Replies: 0
Views: 2,145
Regarding assemblers
Dear All,
I got a lot of illumina data and AbySS gives me odd errors and fail to complete with test data
For my solexa data it just gives errors taht it cannot read my files.
I have downloaded...
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Forum: Bioinformatics
02-14-2011, 07:10 PM
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Replies: 1
Views: 1,601
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Forum: Bioinformatics
01-28-2011, 01:26 AM
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Replies: 1
Views: 1,838
Regarding Solexa data
What exactly does the following mean:
63_k/nohup.out
Output 285695310 out of 495475004 (57.7)% reads in gaps :confused:
352330547 out of 495475004 (71.1)% reads mapped to contigs
...
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Forum: Bioinformatics
01-08-2011, 12:26 AM
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Replies: 22
Views: 11,312
Happy new year
This is too late...
but just want to know if u tried PCAP ?
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Forum: Bioinformatics
01-07-2011, 09:24 PM
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Replies: 0
Views: 1,235
Regarding CONSORT
Dear All,
A Very Happy New Year !!:)
If someone has used or is having CONSORT could you please provide me with it.
I want to use it for scaffolding 454 ata using SOLID data.
Regards,
Ganga Jeena
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Forum: Bioinformatics
12-31-2010, 12:25 AM
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Replies: 0
Views: 2,509
Regarding PCAP and CAP3
:)Happy New Year to all !
Has someone used PCAP or CAP3 for their ssembly or scaffolding purpose ?
Plase guide me with the program as to how should i run PCAP for single end data.
I am getting...
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Forum: Bioinformatics
12-20-2010, 08:12 PM
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Replies: 2
Views: 3,816
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Forum: Bioinformatics
12-20-2010, 01:32 AM
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Replies: 252
Views: 118,045
congrats
:)
Its grt to hear such an achievement.
Is your paper freely available.
Can you mail me downloadable software copy
Regards,
Ganga Jeena
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Forum: Bioinformatics
10-12-2010, 02:57 AM
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Replies: 24
Views: 11,087
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Forum: Bioinformatics
10-12-2010, 02:56 AM
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Replies: 24
Views: 11,087
Regaarding velvetg_de
Error:
velvetg: Can't calloc 18446744072095878219 Annotations totalling 18446744009162615736 bytes: Cannot allocate memory
Reading roadmap file /home/data/7_oct/777//Roadmaps
exit
Wht...
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Forum: Bioinformatics
10-11-2010, 02:15 AM
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Replies: 24
Views: 11,087
>contig00001 length=1782 numreads=47 ...
>contig00001 length=1782 numreads=47
GAAcAAagaG
>contig00001 length=1782 numreads=47
200200202
the output doesnt seem to be correct , can u check it up with the min bases above?
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Forum: Bioinformatics
10-11-2010, 01:55 AM
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Replies: 24
Views: 11,087
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Forum: Bioinformatics
10-10-2010, 09:05 PM
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Replies: 24
Views: 11,087
hello Temima
glad to know of the gud news
cd...
hello Temima
glad to know of the gud news
cd u forward me the script for 454 to color spce conversion,
i hv been also trying to combine 454 and SOLiD data for assembly hwver my experimental...
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