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Forum: Bioinformatics 11-29-2010, 07:18 AM
Replies: 7
Views: 3,960
Posted By dror
thank you!!! ;)

thank you!!! ;)
Forum: Bioinformatics 11-29-2010, 07:18 AM
Replies: 7
Views: 3,960
Posted By dror
wow , great!! its worked!! just with sudo.. ...

wow , great!! its worked!!
just with sudo..
:) :)
Forum: Bioinformatics 11-29-2010, 06:42 AM
Replies: 0
Views: 1,521
Posted By dror
How can i get to Genome Sciences Center clusters ?

hey,
I want to execute python that runs on Genome Sciences Center clusters..
how can i do it?
Forum: Bioinformatics 11-29-2010, 06:38 AM
Replies: 7
Views: 3,960
Posted By dror
ok thanks :) Ubuntu 32 bit i am new in linux...

ok thanks :)
Ubuntu 32 bit
i am new in linux , so sorry for my questions...
i have a private computer, so i guess i can be a root ?
i am trying to install Config General 2.49 and IO compress and...
Forum: Bioinformatics 11-29-2010, 06:27 AM
Replies: 7
Views: 3,960
Posted By dror
can you be more specific? i also cant paste any...

can you be more specific?
i also cant paste any thing in the home folder...
Forum: Bioinformatics 11-29-2010, 04:08 AM
Replies: 7
Views: 3,960
Posted By dror
Config General 2.49

hey, i am trying to install this program..
an i got an error:

ERROR: Can't create '/usr/local/man/man3'
mkdir /usr/local/man/man3: Permission denied at /usr/share/perl/5.10/ExtUtils/Install.pm...
Forum: Bioinformatics 11-29-2010, 03:35 AM
Replies: 36
Views: 30,217
Posted By dror
thank you very much!! now its working!! :)

thank you very much!!
now its working!! :)
Forum: Bioinformatics 11-29-2010, 03:24 AM
Replies: 0
Views: 1,765
Posted By dror
what is mqsub?

i am changing the configuration in ABySS..
Forum: Bioinformatics 11-29-2010, 03:22 AM
Replies: 1
Views: 3,551
Posted By dror
python

What is the difference between python that run on GSC's cluster, to python which run locally?
Forum: Bioinformatics 11-29-2010, 01:14 AM
Replies: 36
Views: 30,217
Posted By dror
i installed zlib from the synaptic in ubuntu. ...

i installed zlib from the synaptic in ubuntu.
do you know which specific should i install?

after i installed another zlib it run, but with many warning..
an now the installation isn't work...
...
Forum: Bioinformatics 11-29-2010, 12:48 AM
Replies: 36
Views: 30,217
Posted By dror
running - python setup.py build, i have this error. why!??!

running build
running build_py
running build_ext
building 'csamtools' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -DFILE_OFFSET_BITS=64...
Forum: Bioinformatics 11-29-2010, 12:39 AM
Replies: 36
Views: 30,217
Posted By dror
running - python setup.py build, i have this error. why!??!

running build
running build_py
running build_ext
building 'csamtools' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -DFILE_OFFSET_BITS=64...
Forum: RNA Sequencing 11-28-2010, 05:19 AM
Replies: 0
Views: 2,798
Posted By dror
python in ABySS

What is the difference between python that run on GSC's cluster, to python which run locally?
in ABySS..
thanks...
Forum: Bioinformatics 11-14-2010, 02:29 AM
Replies: 1
Views: 1,604
Posted By dror
open *.sh files.

hey,
i downloaded files from Sequence Reading Archive from NCBI.
the files are fastq format.
i succeeded to open it in windows.
but i didn't succeeded in linux, i am using ubuntu.
anyone any...
Forum: RNA Sequencing 10-26-2010, 05:36 AM
Replies: 5
Views: 3,113
Posted By dror
thanks mates! :)

thanks mates! :)
Forum: RNA Sequencing 10-24-2010, 12:53 AM
Replies: 5
Views: 3,113
Posted By dror
Can you recommend me where to begin?

Can you recommend me where to begin?
Forum: RNA Sequencing 10-23-2010, 11:56 PM
Replies: 5
Views: 3,113
Posted By dror
RNA-SEQ with no genome

Can i do RNA SEQUENCING without having the genome?
Forum: Illumina/Solexa 07-06-2010, 02:01 AM
Replies: 1
Views: 1,540
Posted By dror
Question new in bowtie...

Hey all, its the first time that i am using bowtie, so be tolerant :).
When i tried to create an index , i didnt sucseed to create the "rev" files.

i saved my data at the main folder, in fastq...
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