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Forum: Academic/Non-Profit Jobs 08-05-2013, 11:40 AM
Replies: 0
Views: 5,676
Posted By muehlsch
Postdoc analyzing NGS data at Harvard (bioinformatics)

Description
A post-doctoral position in human/statistical genomics is available in the laboratory of Dr. J. Danny Muehlschlegel, Department of Anesthesiology, Perioperative and Pain Medicine,...
Forum: Bioinformatics 08-30-2012, 01:57 PM
Replies: 2
Views: 913
Posted By muehlsch
Cuffmerge assemblies on pre and post intervention ? - f/u

I should mention since it might not be clear - the pre and post samples are from the same patients. So pre sample gets taken from patient 1 > intervention > post sample from that patient. The same...
Forum: Bioinformatics 08-30-2012, 01:55 PM
Replies: 2
Views: 913
Posted By muehlsch
Cuffmerge assemblies on pre and post intervention ?

I have RNA-seq data on pre and post intervention. 24 patient samples pre, and then 24 patient samples after the intervention. I will be performing a cuffdiff analysis looking at difference between...
Forum: Bioinformatics 07-17-2012, 10:45 AM
Replies: 2
Views: 3,510
Posted By muehlsch
I am also very interested in the answer. At...

I am also very interested in the answer. At present, when I run cufflinks with bias correction, the program run terminates with an d error. However, when I use cuffdiff with bias correction on the...
Forum: Bioinformatics 03-16-2012, 11:50 AM
Replies: 1
Views: 1,928
Posted By muehlsch
eQTL analysis in Galaxy

I am fairly new to NGS analysis and would like to perform a eQTL analysis in Galaxy. I have used the Galaxy NGS options extensively to run Tophat, Cufflinks, Cuffdiff, GATK, and VCF tools. Does...
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