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Search: Posts Made By: swbarnes2
Forum: Bioinformatics 05-06-2014, 12:13 PM
Replies: 1
Views: 1,621
Posted By swbarnes2
The flag in the cigar string is left 0 by...

The flag in the cigar string is left 0 by default, and is only changed if a piece of software changes it. I'm pretty sure bwa does not check for this, so the fact that the flag is unset by bwa...
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