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alignment assembly atac-seq bam bash bbduk bbmap bcl2fastq bioanalyzer bioinfomatics bioinformactics bioinformatics blast bowtie bowtie2 bwa cancer chip-seq coverage cuffdiff cufflinks demultiplexing deseq2 dna-seq epigenetics error fasta fastq ffpe gatk genetics genome genomics hisat2 htseq-count illumina index introduction linux mapping metagenomics methylation microbiome minion miseq nextera nextseq ngs pacbio programming python qiagen reads rna rna-seq rnaseq rrbs samtools sequencing snp software statistics tophat trimmomatic truseq unix vcf velvet wgs workshop

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