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Search: Posts Made By: Matt.Kanke
Forum: Bioinformatics 08-11-2020, 04:38 PM
Replies: 0
Views: 554
Posted By Matt.Kanke
Using scRNA-seq to help with snRNA-seq clustering

Hi,

I am working with a single nucleotide RNA-seq (snRNAseq) dataset. These are often hard to cluster compared to single cell RNA-seq (scRNAseq). I was wondering if you could combine a snRNAseq...
Forum: Bioinformatics 01-31-2018, 08:03 AM
Replies: 0
Views: 1,670
Posted By Matt.Kanke
Multi species RNA-seq comparison

Hi all,

I have count tables from two species. I'd like to find the find orthologous genes between the species and compare how the orthologs respond to a treatment using DESeq2. My question is:
...
Forum: Bioinformatics 07-11-2016, 07:50 AM
Replies: 2
Views: 1,876
Posted By Matt.Kanke
Thanks for the response.

Thanks for the response.
Forum: Bioinformatics 07-06-2016, 05:42 AM
Replies: 2
Views: 1,876
Posted By Matt.Kanke
STAR alignment - splice acceptor site vs mismatch

This is more a question about how STAR works. In figure 1 of the paper (here (http://bioinformatics.oxfordjournals.org/content/early/2012/10/25/bioinformatics.bts635.full.pdf+html)), the aligner can...
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