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Forum: Bioinformatics 08-31-2012, 01:12 PM
Replies: 3
Views: 3,083
Posted By mez
Sorry, I guess I should say the reads have been...

Sorry, I guess I should say the reads have been assembled into contigs, I was having trouble aligning the genomes of the different strains, but I am making progress on that now. Just trying to figure...
Forum: Bioinformatics 08-29-2012, 07:40 AM
Replies: 3
Views: 3,083
Posted By mez
Creating Phylogenetic tree from MAF format file

I hope this is relevant to the discussions here.

I am working on a metagenome project and have genome sequences of several strains of a bacteria species, un-assembled, but in contig reads. I used...
Forum: Bioinformatics 03-28-2012, 02:17 PM
Replies: 4
Views: 2,265
Posted By mez
1000 genomes site BAM Files

Please,

I would like anyone who has had experience working with the .bam alignment files from the 1000 genomes site to help me out with this situation. I have been trying for long to get a...
Forum: Bioinformatics 11-13-2011, 02:50 PM
Replies: 9
Views: 5,910
Posted By mez
Yes, I want to get the consensus FASTA sequence...

Yes, I want to get the consensus FASTA sequence from the BAM file for a given chromosome region(not necessarily the whole chromosome sequence).
Forum: Bioinformatics 11-12-2011, 03:38 PM
Replies: 9
Views: 5,910
Posted By mez
Question FASTA sequence From large BAM file

I hope I would be able to get some help even though my question will sound very basic, I am new to sequencing formats.

I am working on a project that involves obtaining reference sequences from...
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