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Search: Posts Made By: scondo
Forum: Bioinformatics 08-02-2013, 12:29 AM
Replies: 2
Views: 1,511
Posted By scondo
Samtools mpileup for Solid Data - calls wrong and too less SNP/INDELS

Hello,

i simulated SOLiD-PE Reads with dwgsim and use BWA (0.5-Version) for mapping in Colorspace. When use the mpileup command from Samtools i got no ja wrong and strange output. I use the same...
Forum: Bioinformatics 04-22-2013, 02:08 AM
Replies: 0
Views: 707
Posted By scondo
Searching tool for Genome Manipulation

Hey,

i searching for a tool with which i can manipulate my reference genome. I want to add SNP and INDELS to my reference genome and i expect an manipulate Genome and a file with including...
Forum: Bioinformatics 03-21-2013, 04:38 AM
Replies: 0
Views: 775
Posted By scondo
DWGSIM quality distribution

Hi,

i use the following command for illumina 100 PE read simulation. The problem is that all simulated reads had the same quality score. I want to simulate reads with a raw accuracy of about...
Forum: Bioinformatics 03-06-2013, 06:57 AM
Replies: 0
Views: 856
Posted By scondo
dwgsim -x command don't work

Hi,

i want to simulate reads with a Bed-file. I use the -x command but i didn't get any output.

FILE ucsc_chr1.pa.fa
-> Sequence of CHR1 fa-format


FILE test_chr1_exon_1.bed:
Forum: Bioinformatics 03-06-2013, 03:45 AM
Replies: 3
Views: 1,408
Posted By scondo
current read length of Solid and Solexa

Hi,

does everyone knows the current read length of Solid an Solexa?

THX
Forum: Introductions 03-06-2013, 03:39 AM
Replies: 0
Views: 638
Posted By scondo
Hello from Innsbruck!

Hello everybody from sunny Austria!
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