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Search: Posts Made By: manuelkleiner
Forum: Bioinformatics 03-16-2015, 02:09 PM
Replies: 61
Views: 17,419
Posted By manuelkleiner
Wow that was fast! Thank you Brian! I will test...

Wow that was fast! Thank you Brian!
I will test it tomorrow and let you know how it works out for me.

@GenoMax: the 20,000 Mulit-fasta files are the product of a rather strict binning of multiple...
Forum: Bioinformatics 03-13-2015, 12:02 PM
Replies: 61
Views: 17,419
Posted By manuelkleiner
Problem with argument length

Dear Brian,
I have run into a problem when trying to create an index for bbsplit using a large number of files (~20,000). In the example below the variable $files contains 20,000 comma delimited,...
Forum: Bioinformatics 06-20-2014, 01:10 PM
Replies: 304
Views: 80,136
Posted By manuelkleiner
Cool thank you!

Cool thank you!
Forum: Bioinformatics 06-17-2014, 01:33 PM
Replies: 304
Views: 80,136
Posted By manuelkleiner
Hi Brian, Thank you for your fast reply and for...

Hi Brian,
Thank you for your fast reply and for explaining how I can check if these first 10 bases should really be trimmed. Very elegant way to test this.
Best,
Manuel
Forum: Bioinformatics 06-17-2014, 10:19 AM
Replies: 304
Views: 80,136
Posted By manuelkleiner
Cut off the first 10 bp of each read with BBDuk

Dear Brian,
Thank you for BBDuk. Great tool!
I have been using it so far for quality and adapter trimming, but there is one additional trimming step that I would like to do with it and I am not...
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