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Forum: Bioinformatics 10-13-2016, 12:20 PM
Replies: 6
Views: 1,317
Posted By wdecoster
Both homologous chromosomes are collapsed in a...

Both homologous chromosomes are collapsed in a haploid reference genome. You have a maternal and paternal chr1 but those are just one reference chr1
Forum: Bioinformatics 10-13-2016, 03:37 AM
Replies: 6
Views: 1,317
Posted By wdecoster
No, the reference genome is haploid. Things get...

No, the reference genome is haploid. Things get more complicated when taking alternative haplotypes into account in hg38, but don't worry about that part :p
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