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Forum: Genomic Resequencing 10-01-2016, 01:42 PM
Replies: 1
Views: 5,488
Posted By Mr.Zurich1992
Abnormaly amount of reads

I have sequenced my genome with depth 10x. When i use IGV, I can see on chromosome 5 a small sequence where it shows a very high amount of reads like over 2000 reads!!! thats crazy. Why that? My...
Forum: De novo discovery 04-13-2016, 03:16 PM
Replies: 2
Views: 4,783
Posted By Mr.Zurich1992
cause

Because there is a terrible genetic problem in my case. Something biochemocally is going wrong in my body. There is a defective gene in my genome. Sbould be idemtified to success further in life....
Forum: De novo discovery 03-31-2016, 08:36 AM
Replies: 2
Views: 4,783
Posted By Mr.Zurich1992
denovo mutations

How can I know that a shown de novo mutation is really a right positive de novo mutation?

How I can know that a shown de novo mutation is false positive?
Forum: De novo discovery 02-27-2016, 05:36 AM
Replies: 1
Views: 3,111
Posted By Mr.Zurich1992
IGV genome browser

How I can see all de novo mutation with IGV browser when comparing with parents genomes?

Is there a menu for this operation.
Forum: De novo discovery 02-27-2016, 05:31 AM
Replies: 0
Views: 3,062
Posted By Mr.Zurich1992
genome sequencing 10x

If you look for denovo mutation, a sequencing depth of 10x is too low? Really? Doesn't a sequencing 10x show you the the majority of denovo mutation, if you campare your DNA with your parents DNA?
Forum: Bioinformatics 08-27-2014, 04:19 AM
Replies: 1
Views: 1,239
Posted By Mr.Zurich1992
What about Golden Helix Genome Browser?

What about Golden Helix Genome Browser?
Forum: General 08-27-2014, 04:15 AM
Replies: 16
Views: 4,595
Posted By Mr.Zurich1992
UTR sequence and de novo mutations

I have started to check my entire exomes for de novo mutations. I have already realised that there are many de novo mutations in UTR-regions! Is this normal? Hasn't that an effect on how the mRNA...
Forum: General 08-20-2014, 03:04 PM
Replies: 16
Views: 4,595
Posted By Mr.Zurich1992
I have exome sequenced my DNA! I will make list...

I have exome sequenced my DNA! I will make list of de novo mutations!

I want to say that I have looked for genes which do interact with the AR-gene. I have found out that I have a de novo...
Forum: General 08-09-2014, 10:53 AM
Replies: 16
Views: 4,595
Posted By Mr.Zurich1992
I don't say homosexuality is pathological in most...

I don't say homosexuality is pathological in most gays. But i do believe homosexuality is a natural and normal biological anomaly. But I also think my homosexuality do have its cause in a very rare...
Forum: General 08-09-2014, 02:37 AM
Replies: 16
Views: 4,595
Posted By Mr.Zurich1992
Despite that it doesn't change the fact I will...

Despite that it doesn't change the fact I will look for de novo mutation. Because in my particular something pathological is at work!
Forum: General 08-08-2014, 12:45 PM
Replies: 16
Views: 4,595
Posted By Mr.Zurich1992
But on average a son has between 40 until 70 new...

But on average a son has between 40 until 70 new de novo mutations in the DNA!

I am pretty sure male homosexuality mostly caused by prenatal/perinatal hormonal condition in interaction with gene...
Forum: General 08-08-2014, 11:54 AM
Replies: 16
Views: 4,595
Posted By Mr.Zurich1992
But I'm not even fully confident with exome...

But I'm not even fully confident with exome trio-parent and brother sequencing. Better was FULL genome sequencing. But well Encode has find out that only 8,2% of human DNA is biological active.
...
Forum: General 08-07-2014, 03:46 PM
Replies: 16
Views: 4,595
Posted By Mr.Zurich1992
Exactly this I planned to do. I don't have the...

Exactly this I planned to do. I don't have the money to do that actually. But soon I will have.

You don't know how often I get insulted in the public! On photos my face do look very alien like....
Forum: General 08-07-2014, 11:34 AM
Replies: 16
Views: 4,595
Posted By Mr.Zurich1992
De novo mutations and homosexuality

Is there a possibility that a minority of male homosexuals are gay cause of rare de novo mutations?

I'm gay I do look very weird. Very often I get insultet with painful words like ''faggot''. I...
Forum: Genomic Resequencing 05-04-2013, 04:12 AM
Replies: 40
Views: 38,626
Posted By Mr.Zurich1992
Isn't possible I could convert the FASTQ files to...

Isn't possible I could convert the FASTQ files to bam files?


Cause there is a good program called Bamseek. Bamseek is able to read the FASTQ files, but the result is a big mess.
Forum: Genomic Resequencing 05-04-2013, 03:14 AM
Replies: 40
Views: 38,626
Posted By Mr.Zurich1992
I'm using Winsows vista 32-bit and winrar It...

I'm using Winsows vista 32-bit and winrar

It doesn't run on Windows?


Anyway I'm looking forward to get the exome result variant, too.
Forum: Genomic Resequencing 05-04-2013, 03:02 AM
Replies: 40
Views: 38,626
Posted By Mr.Zurich1992
I am not even able TO OPEN the exome data!

I am not even able TO OPEN the exome data!
Forum: Genomic Resequencing 05-04-2013, 02:55 AM
Replies: 40
Views: 38,626
Posted By Mr.Zurich1992
It doesn't run.

It doesn't run.
Forum: Genomic Resequencing 05-04-2013, 02:44 AM
Replies: 40
Views: 38,626
Posted By Mr.Zurich1992
I have to download BWA?

I have to download BWA?
Forum: Genomic Resequencing 05-04-2013, 02:32 AM
Replies: 40
Views: 38,626
Posted By Mr.Zurich1992
How to read FASTQ files?

Hi


I have sequenced my exomes by Genebygene in Houston, TX. I got now the exome data. But the exome data has FASTQ files. I can't use them. What I have to do?
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