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Forum: Genomic Resequencing 05-29-2015, 12:26 AM
Replies: 1
Views: 1,901
Posted By Itay.zemach
mutations file

Hello all,

I just finished generating BAM file of resequenced tomato line from paired end (reads size 100bp).
and view it through IGV (aligned to reference genome). Do you familiar with any way...
Forum: MGISEQ (FKA Complete Genomics) 12-16-2014, 06:04 AM
Replies: 0
Views: 6,488
Posted By Itay.zemach
Basic bioinformatics for dummy

Hello everyone,

My study involove GWAS methods in tomato. I genotyped 109 lines for 7720 SNP markers and I have the results in excel and here is small example:
SNP NAME CHR POSITION ...
Forum: Bioinformatics 05-30-2013, 03:01 AM
Replies: 7
Views: 1,988
Posted By Itay.zemach
Thank's RDW I will try it and answer ASAP

Thank's RDW
I will try it and answer ASAP
Forum: Bioinformatics 05-18-2013, 12:01 PM
Replies: 7
Views: 1,988
Posted By Itay.zemach
can you recommend for unix like machine to download

Can you recommend for unix like machine to download?
Forum: Bioinformatics 05-16-2013, 03:06 AM
Replies: 7
Views: 1,988
Posted By Itay.zemach
Opening non indexed BAM file

Hi all

I just recieved 11.5GB BAM file and I want to view these sequences.
I read that first i need to index the file and just then to view it in IGV or Genome Workbench. I am really stuck while...
Forum: Introductions 05-16-2013, 02:58 AM
Replies: 0
Views: 736
Posted By Itay.zemach
Thumbs up Hello Seq answers members

I am Itay Zemach, M.Sc student in the Hebrew Unoversity of Jerusalem in Dani Zamir lab. Our lab Intersting is Tomato genetics and genomics.
In my study I try to combine phenotyipic and genotypic...
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