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Search: Posts Made By: ECO
Forum: Bioinformatics 07-18-2008, 08:21 AM
Replies: 22
Views: 34,322
Posted By ECO
1.11 has solved all my compiling problems. Now...

1.11 has solved all my compiling problems. Now to find some indels! :D
Forum: Bioinformatics 07-17-2008, 11:55 PM
Replies: 22
Views: 34,322
Posted By ECO
New version out today... see: ...

New version out today... see:

ftp://ftp.genomics.org.cn/pub/soap/
Forum: Bioinformatics 07-16-2008, 09:08 AM
Replies: 22
Views: 34,322
Posted By ECO
No luck...I'm corresponding with the SOAP team,...

No luck...I'm corresponding with the SOAP team, hopefully they will be able to help me through it. Thanks for the help jjcook


g++ -DMAXGAP=3 -DMAXHITS=10000 -DTHREAD -O3 -DDB_CHR -DREAD_60 ...
Forum: Bioinformatics 07-15-2008, 01:59 PM
Replies: 22
Views: 34,322
Posted By ECO
Heh...error keeps getting shorter....I also...

Heh...error keeps getting shorter....I also removed the -static flag on advice received from the SOAP team.

g++ -DMAXGAP=3 -DMAXHITS=10000 -DTHREAD -O3 -DDB_CHR -DREAD_60 -c main.cpp -o...
Forum: Bioinformatics 07-15-2008, 12:17 PM
Replies: 22
Views: 34,322
Posted By ECO
We're gettin' there...thanks again for your help....

We're gettin' there...thanks again for your help. The #include removed most of the errors:

g++ -static -DMAXGAP=3 -DMAXHITS=10000 -DTHREAD -O3 -DDB_CHR -DREAD_60 -c main.cpp -o main.chr.o
In...
Forum: Bioinformatics 07-15-2008, 08:19 AM
Replies: 22
Views: 34,322
Posted By ECO
Thanks JJcook...that worked a treat. I have...

Thanks JJcook...that worked a treat. I have another problem with this one, this time on openSUSE11:


ericbox:/home/eco/dl/soap_1.10 # make
g++ -static -DMAXGAP=3 -DMAXHITS=10000 -DTHREAD -O3 ...
Forum: Bioinformatics 07-06-2008, 09:25 AM
Replies: 22
Views: 34,322
Posted By ECO
Any hints on compiling this thing on OSX? ...

Any hints on compiling this thing on OSX?


eco@##:~/perl/soap/soap_1.10$ sudo make
Password:
g++ -static -DMAXGAP=3 -DMAXHITS=10000 -DTHREAD -O3 -DDB_CHR -DREAD_60 -c align.cpp -o...
Forum: Bioinformatics 05-06-2008, 07:15 AM
Replies: 22
Views: 34,322
Posted By ECO
It's back up for me too, but I've hosted the tar...

It's back up for me too, but I've hosted the tar in the first post just in case! Thanks RudyS.
Forum: Bioinformatics 05-05-2008, 02:01 PM
Replies: 22
Views: 34,322
Posted By ECO
As usual, if someone PM's me, I will host it! :D

As usual, if someone PM's me, I will host it! :D
Forum: Bioinformatics 05-03-2008, 08:22 AM
Replies: 22
Views: 34,322
Posted By ECO
hey rudy. welcome. definitely sounds like you...

hey rudy. welcome. definitely sounds like you need to take a look at this thread:

http://seqanswers.com/forums/showthread.php?t=43

...and the SOAP site is down for me too... :/
Forum: Bioinformatics 01-31-2008, 07:22 AM
Replies: 22
Views: 34,322
Posted By ECO
SOAP: short oligonucleotide alignment program.

New paper out describing a new alignment tool. I don't have a subscription to Bioinformatics, so I must be content with the abstract until I can dig up the paper...
...
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