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Forum: RNA Sequencing 06-03-2009, 07:44 AM
Replies: 2
Views: 2,730
Posted By geriatrics1200
TopHat: output is not recognized by UCSC

Hi, we ran TopHat without a GFF3 file and the output does not appear to be recognizable wiggle and bed formats. Here is what we got (first lines) of the wiggle file:
track type=bedGraph name="TopHat...
Forum: RNA Sequencing 06-02-2009, 11:19 AM
Replies: 12
Views: 5,920
Posted By geriatrics1200
Hello, I'm wondering if anybody can direct me to...

Hello, I'm wondering if anybody can direct me to a GFF3 for mouse. I came across GFF3 files for many organisms besides mouse (http://www.sequenceontology.org/resources/databases.html).
Forum: RNA Sequencing 06-02-2009, 11:12 AM
Replies: 2
Views: 5,223
Posted By geriatrics1200
I've been looking for the same file but for...

I've been looking for the same file but for mouse.

I did come across such files being available for many organisms (including human but not mouse). Try this:...
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