SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 3 of 3
Search took 0.00 seconds.
Search: Posts Made By: Aragion
Forum: Bioinformatics 05-26-2017, 05:59 AM
Replies: 0
Views: 636
Posted By Aragion
Alignment and assembly of metatranscriptomic paired-end reads

Hello.

I have the sets of metatranscriptomic Illumina paired-end reads. I need to align them against the database of plant virus genomes (about 55000 sequences) and calculate coverage for each...
Forum: Bioinformatics 02-03-2017, 03:02 AM
Replies: 1
Views: 1,836
Posted By Aragion
Assembly of metatranscriptomic data

Hello.
I have a set of reads produced by metatranscriptomic cDNA sequensing of the total RNA sample. I need to assemble the RNA-virus genome, which was detected in this sample by the...
Forum: Bioinformatics 12-20-2016, 08:08 AM
Replies: 2
Views: 1,707
Posted By Aragion
Low tophat2 mapping of paired-end reads

Hello. I'm trying to map paired-end reads on the reference scaffold using tophat2, but the percentage of mapped reads is almost 0%.

Left reads: Input: 9526882
Mapped: 224 ( 0.0% of input)
of...
Showing results 1 to 3 of 3

 


All times are GMT -8. The time now is 10:10 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO