Forum: RNA Sequencing
11-28-2012, 03:36 PM
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Replies: 27
Views: 59,962
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Forum: RNA Sequencing
11-26-2012, 04:30 PM
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Replies: 27
Views: 59,962
As you guys can see in the previous messages, I...
As you guys can see in the previous messages, I am new in this field. I am using the public Galaxy server, and for the first time I run sample with TopHat-Cufflink-Cuffcompare-Cuffdiff. Can anyone...
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Forum: RNA Sequencing
11-19-2012, 09:34 PM
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Replies: 27
Views: 59,962
Hello,
I tried to run cufflinks after TopHat...
Hello,
I tried to run cufflinks after TopHat mapping and as a genome reference annotation it requires a file in gtf format. I downloaded the genome annotation from the JGI website (I am working with...
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Forum: RNA Sequencing
11-19-2012, 08:32 PM
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Replies: 27
Views: 59,962
Thanks jgoecks,
Yes, I am using the public...
Thanks jgoecks,
Yes, I am using the public Galaxy server.
As you said the job took a while to start, but after that it was quick enough. Now there is an update of the server so I have to wait....
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Forum: RNA Sequencing
11-18-2012, 11:22 AM
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Replies: 27
Views: 59,962
Hi all,
I am new in the forum and also in the...
Hi all,
I am new in the forum and also in the RNA seq analysis field.
I just a got the results of my RNA sequencing and I am trying to map my reads using tophat on galaxy. I am working with...
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