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Forum: Bioinformatics 12-13-2012, 08:42 AM
Replies: 37
Views: 88,734
Posted By rama
Thanks Laura, for trying it out.

Thanks Laura, for trying it out.
Forum: Bioinformatics 12-12-2012, 03:58 PM
Replies: 37
Views: 88,734
Posted By rama
Hi Laura, I am still having trouble with...

Hi Laura,

I am still having trouble with extracting the variant calls of a specific sample.

As you pointed out earlier that I have downloaded sites file with no genotype column, so now I got...
Forum: Bioinformatics 12-07-2012, 12:36 PM
Replies: 37
Views: 88,734
Posted By rama
Laura, I tried with downloading both the...

Laura,

I tried with downloading both the vcf.gz and tbi files. but it did not work and it is difficult to interpret the error. can you see what I am doing wrong here

./tabix -h...
Forum: Bioinformatics 12-06-2012, 05:37 PM
Replies: 37
Views: 88,734
Posted By rama
Laura, how/what should I specify, if I don't...

Laura,

how/what should I specify, if I don't have particular region to look at and want to get all genome-wide variants?

Thanks so much for you kind help.
Forum: Bioinformatics 12-06-2012, 10:35 AM
Replies: 37
Views: 88,734
Posted By rama
Laura, Thanks much for your reply. I am...

Laura,

Thanks much for your reply. I am guessing this is the example for getting the vcf of sample.

tabix -h ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20100804/ALL.2of4in......
Forum: Bioinformatics 12-05-2012, 03:18 PM
Replies: 37
Views: 88,734
Posted By rama
vcf file of specific sample from 1000Genome data

Hi,

Can anyone help me how to access the vcf file of a specific sample from 1000Genome data. I found the consensus file at (ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release) but couldn't find...
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