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Search: Posts Made By: cboustred
Forum: Bioinformatics 01-21-2013, 02:56 AM
Replies: 4
Views: 3,327
Posted By cboustred
OK I have found a work around If I use the...

OK I have found a work around

If I use the mpileup -A flag (count anomolous read pairs) then the region is included in the pileup

BW

Chris
Forum: Bioinformatics 01-18-2013, 01:10 AM
Replies: 4
Views: 3,327
Posted By cboustred
Samtools mpileup - start and end segments

Hi,

I'm having a problem calling a variant with NGS which has been confirmed via Sanger sequencing.

I'm using samtools mpileup followed by VarScan.

Bit of background
The lab are doing...
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