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Forum: Bioinformatics 08-28-2016, 10:23 PM
Replies: 24
Views: 5,764
Posted By shi
Can you update to Subread 1.5.1 and try again?

Can you update to Subread 1.5.1 and try again?
Forum: Bioinformatics 02-24-2016, 12:52 PM
Replies: 24
Views: 5,764
Posted By shi
What is the version of featureCounts you use?

What is the version of featureCounts you use?
Forum: Bioinformatics 01-03-2016, 04:11 PM
Replies: 24
Views: 5,764
Posted By shi
That's great. Thanks for letting us know.

That's great. Thanks for letting us know.
Forum: Bioinformatics 10-29-2015, 04:41 PM
Replies: 24
Views: 5,764
Posted By shi
We have downloaded the bam file and found that...

We have downloaded the bam file and found that the problem was caused by excessively long bam header lines.

We will try to fix this and release a patched version soon.
Forum: Bioinformatics 10-27-2015, 03:16 PM
Replies: 24
Views: 5,764
Posted By shi
OK, could you please just post the first few...

OK, could you please just post the first few reads before we try to download the data?
Forum: Bioinformatics 10-27-2015, 01:51 PM
Replies: 24
Views: 5,764
Posted By shi
There seems to be a problem with accessing reads...

There seems to be a problem with accessing reads in the BAM file. featureCounts tried to parse the bam file and read in first few reads, but do not know what happened there that caused seg fault....
Forum: Bioinformatics 03-19-2015, 05:57 PM
Replies: 24
Views: 5,764
Posted By shi
The latest version is 1.4.6-p1. But I don't think...

The latest version is 1.4.6-p1. But I don't think that will make a difference.

Have you tried @GenoMax's suggestion to check if your bam file is corrupted? You may also try to subset your bam file...
Forum: Bioinformatics 02-19-2015, 04:49 PM
Replies: 24
Views: 5,764
Posted By shi
Hi @batel, You do not need to use '-b'...

Hi @batel,

You do not need to use '-b' option when you provide BAM format input. featureCounts automatically detects input format for you.

Please make sure you are using the latest version...
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