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Forum: Bioinformatics

09-08-2017, 02:25 AM

Replies: 3

UMI-Tools version 0.5: now with tools for cell barcoded scRNA-seq

Views: 2,141

Posted By mohonardost

Thanks It worked.

Thanks
It worked.

Forum: Bioinformatics

09-07-2017, 08:04 PM

Replies: 3

UMI-Tools version 0.5: now with tools for cell barcoded scRNA-seq

Views: 2,141

Posted By mohonardost

UnboundLocalError: local variable 'local_min' referenced before assignment

Hello

I went through your tutorial which you have provided in this link (Droplet-barcoded single cell RNA-seq walk-through), trying to repeat the codes. Accordingly I used the following command...

Forum: Bioinformatics

09-06-2017, 08:05 AM

Replies: 0

umi_tools whitelist error

Views: 777

Posted By mohonardost

umi_tools whitelist error

Hello everyone

I used the following command to make a whitelist using umi-tools (v=0.5.0) and python (v=2.7.13):

umi_tools whitelist --stdin hgmm_100_R1.fastq.gz \
...

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