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Forum: Bioinformatics 08-17-2011, 07:00 AM
Replies: 8
Views: 3,048
Posted By Magnus
+1, same error for me as well. Tested both...

+1, same error for me as well.

Tested both extended_CFLAGS="-m64 -D_FILE_OFFSET_BITS=64" and the patch without any success :(.

What could I do to help you find a solution Nils?
Forum: Bioinformatics 05-19-2011, 03:59 AM
Replies: 0
Views: 3,823
Posted By Magnus
Ion Torrent PGM data with Mosaik-aligner

Does anyone have any experience of using the Mosaik-aligner to look at Ion Torrent (PGM) data? Any advice on parameters to use? Is it even possible to-use Mosaik for this?
Forum: SOLiD 05-20-2010, 07:23 AM
Replies: 4
Views: 2,968
Posted By Magnus
No, sorry, I'm new to this (Velvet with...

No, sorry, I'm new to this (Velvet with color-space). Where can I find information on how to do this?

Best
Magnus
Forum: SOLiD 05-18-2010, 09:24 AM
Replies: 4
Views: 2,968
Posted By Magnus
SOLiD and Velvet 0.7.63

Hi

I'm trying to run Velvet on SOLiD data. Have done as follows:

Compiled Velvet with color-space support, and increased hash size support.
make 'MAXKMERLENGTH = 50' & color

Creates a data...
Forum: Bioinformatics 11-04-2009, 01:07 AM
Replies: 0
Views: 1,809
Posted By Magnus
Memory problems with MosaikAligner 1.0.1307 (removed -km and -pm)

Hi

There was an option in "old" MosaikAligner to load the keys-file, and/or positions-file into the memory by using "-km" and "-pm" from a reference jump database. I was never able to load both...
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