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Search: Posts Made By: houkto
Forum: General 02-17-2012, 10:44 AM
Replies: 1
Views: 2,871
Posted By houkto
Hi there, I am trying to achieve the same...

Hi there,

I am trying to achieve the same thing. I believe almost everyone is going for http://circos.ca/ you can install it in windows or linux and it very well documented and they have a forum...
Forum: General 02-17-2012, 10:38 AM
Replies: 1
Views: 2,002
Posted By houkto
Alignment to selected region of the reference genome

Hi There,

I usually align my NGS reads of rat strains to Brown Norway (rat) reference genome. However, the rat reference genome still a draft and there are many gaps in the genome. Recently, we...
Forum: Bioinformatics 02-02-2012, 04:16 AM
Replies: 0
Views: 1,537
Posted By houkto
Red face NGS whole genome sequence versus sequence capture for quality control

Hi there,

I am trying to compare NGS whole genome sequence data (two strains, one with x26 coverage and the other with x21 coverage) and custom agilent sequence capture of selected regions from...
Forum: Bioinformatics 12-31-2011, 02:11 PM
Replies: 10
Views: 5,018
Posted By houkto
I saw a similar error in another forum...

I saw a similar error in another forum http://biostar.stackexchange.com/questions/15829/bwa-index-segmentation-fault it turns out to be a hardware issue i.e memory less than 2G


N.B happy new year
Forum: Bioinformatics 10-03-2011, 05:02 AM
Replies: 0
Views: 929
Posted By houkto
Variation callings from NextGen genome sequence into gene expression

Hi there,

I am trying to find a script or a tools that removed the probes in a cdf file of a expression data using the variant discovery from comparing two strains? so we can improved our...
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