SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 3 of 3
Search took 0.01 seconds.
Search: Posts Made By: mhayes
Forum: Bioinformatics 12-12-2011, 10:54 AM
Replies: 4
Views: 1,716
Posted By mhayes
Thank you, rmdavies. The srf_list program also...

Thank you, rmdavies. The srf_list program also returns an "Unknown block type" error, and for all reads after this error, the file position is listed as "-1".

However, all of the reads seem to be...
Forum: Bioinformatics 12-09-2011, 08:40 AM
Replies: 4
Views: 1,716
Posted By mhayes
The SRF files are from the European...

The SRF files are from the European Genome-phenome Archive. These datasets are not publicly available, however.

For one of the SRF files that caused this error, I dumped it to a text file and...
Forum: Bioinformatics 12-08-2011, 07:40 PM
Replies: 4
Views: 1,716
Posted By mhayes
Staden package question: is srf2fastq returning an error, or is this normal?

I'm attempting to convert an SRF file into FASTQ format using srf2fastq, which is a tool included in the Staden package.

I'm executing the following command:

srf2fastq -s BC3 -a -n -c in.srf
...
Showing results 1 to 3 of 3

 


All times are GMT -8. The time now is 11:06 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO