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Forum: Bioinformatics 04-17-2013, 12:21 PM
Replies: 0
Views: 2,278
Posted By Mimoeschen
RepeatMasker track UCSC in R

Hi,

I have problems loading the repeatmasker track from UCSC into R. I try to use the makeFeatureDbFromUCSC function from the GenomicFeatures package. The R code and the corresponding error...
Forum: Bioinformatics 04-17-2013, 12:12 PM
Replies: 3
Views: 2,095
Posted By Mimoeschen
Thank you very much Rhizosis! I have...

Thank you very much Rhizosis!

I have changed my strategy now to allow more than one match and filter by length afterwards. Since I have multiple query sequences, the files get huge, but I guess...
Forum: Bioinformatics 04-05-2013, 02:15 AM
Replies: 3
Views: 2,095
Posted By Mimoeschen
blastn: restrict output to same length as query

Hi,

I would like to filter my blastn output to look at hits in their full length relative to the query, not just including the matching part.

One way, I came up with, is to filter all output...
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