Forum: RNA Sequencing
06-06-2012, 12:45 PM
|
|
Replies: 8
Views: 2,281
I have a similar question. I would like to know...
I have a similar question. I would like to know if there is differential expression of unannotated transcripts in RNAseq data. I have a particular unannotated transcript that I can see visually as...
|
|
Forum: Bioinformatics
05-29-2012, 02:00 PM
|
|
Replies: 2
Views: 1,501
|
|
Forum: Bioinformatics
05-29-2012, 01:18 PM
|
|
Replies: 2
Views: 2,653
I am also having a problem installing goseq.
...
I am also having a problem installing goseq.
Warning messages:
1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘XML’ had non-zero exit status
2:...
|
|
Forum: Bioinformatics
05-29-2012, 01:15 PM
|
|
Replies: 2
Views: 1,501
|
|
Forum: Bioinformatics
05-29-2012, 01:10 PM
|
|
Replies: 2
Views: 1,501
installing goseq
I am trying to install goseq in R, but receiving installation errors. It looks like other packages are missing when I try to install those other packages I get install errors too, which also suggest...
|
|
Forum: Bioinformatics
05-25-2012, 11:55 AM
|
|
Replies: 5
Views: 3,138
|
|
Forum: Bioinformatics
05-25-2012, 11:53 AM
|
|
Replies: 22
Views: 4,733
I have a list of DE genes in chicken tumor...
I have a list of DE genes in chicken tumor samples retrieved from a cuffdiff analysis. I would like to determine if these genes are part of a pathway. Does anyone have a recommendation for a...
|
|
Forum: RNA Sequencing
05-25-2012, 11:50 AM
|
|
Replies: 12
Views: 8,598
I am working with chicken RNAseq dataset. I...
I am working with chicken RNAseq dataset. I completed my analysis with cuffdiff and have a list of DE genes. How can I do about finding if these genes are involved in a pathway? Can I use the...
|
|
Forum: Bioinformatics
05-24-2012, 12:20 PM
|
|
Replies: 8
Views: 3,779
|
|
Forum: Bioinformatics
05-24-2012, 10:56 AM
|
|
Replies: 8
Views: 3,779
|
|
Forum: RNA Sequencing
05-24-2012, 10:07 AM
|
|
Replies: 1
Views: 1,317
|
|
Forum: Bioinformatics
05-24-2012, 09:50 AM
|
|
Replies: 8
Views: 3,779
Hi Bjorn,
Thank you for the reply. And for...
Hi Bjorn,
Thank you for the reply. And for the link on this tool. I already have the cuffdiff output and I would use command line but I am wondering where to begin. How do I retrieve all of the...
|
|
Forum: Bioinformatics
05-24-2012, 09:37 AM
|
|
Replies: 8
Views: 3,779
yes, I have used cummeRbund to plot some of the...
yes, I have used cummeRbund to plot some of the graphs. Which look nice, but I am more curious in pulling out differential expressed genes. I would like to look at the data globally vs. picking and...
|
|
Forum: Bioinformatics
05-24-2012, 08:45 AM
|
|
Replies: 8
Views: 3,779
RNAseq data analysis
I recently started some RNAsequencing of tumor samples. My main question is regarding the differential gene expression among samples and controls. I have successful utilized tophat, cufflinks, and...
|
