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454 alignment assembly atac-seq bam bbduk bbmap bbtools bioanalyzer bioinfomatics bioinformactics bioinformatics blast bowtie bowtie2 bwa cancer chip-seq coverage cuffdiff cufflinks cuffmerge deseq deseq2 dna-seq edger epigenetics error fasta fastq fastqc fpkm gatk genome genomics hisat2 hiseq htseq-count illumina index linux mapping metagenomics microbiome miseq nextera nextseq ngs novaseq pacbio pipeline python qiagen reads rna rna-seq rnaseq rrbs sam samtools sequencing snp software tophat trimmomatic truseq vcf velvet wgs workshop

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