SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 11 of 11
Search took 0.02 seconds.
Search: Posts Made By: paumarc
Forum: MGISEQ (FKA Complete Genomics) 03-22-2016, 08:07 AM
Replies: 1
Views: 5,302
Posted By paumarc
Does exists some repository with bam/fastq files?

Hi everybody

I am trying to set up a pipeline for detecting large gene deletions. I think the samples that I am testing don't contain this kind of deletions. I would like to test the pipeline...
Forum: Bioinformatics 03-22-2016, 07:59 AM
Replies: 3
Views: 1,207
Posted By paumarc
thanks for your help pau

thanks for your help

pau
Forum: Bioinformatics 11-10-2015, 06:42 AM
Replies: 1
Views: 1,332
Posted By paumarc
calculus of kmer coverage per chromosomes

Hello everybody

I am trying to find a method to calculate the kmer coverage for each chromosome. I tried genomeCoverageBed and it seems that it is the total coverage of each region of chromosome....
Forum: Bioinformatics 10-09-2015, 06:41 AM
Replies: 2
Views: 1,580
Posted By paumarc
from gene coverage to sex determination

Hello everybody

I am interested in determining sex from my nextseq runs. I read somewhere that a possibility is to calculate gene coverage for X and Y genes and then do sex determination

if...
Forum: Bioinformatics 09-18-2015, 02:17 AM
Replies: 3
Views: 1,207
Posted By paumarc
Rapidr invalid class “SummarizedExperiment”

Hello everybody,

I am trying to set up a pipeline to aneuploidy prenatal diagnostic. In order to perform the analysis, I am using rapidR.

To create a binned bound file from BAM's, I do;
...
Forum: Bioinformatics 06-30-2015, 06:57 AM
Replies: 0
Views: 1,245
Posted By paumarc
Analysis data with edgeR having some values missed

Hello everybody!

I'm trying to analyse some pyrosequencing data that some colleges sent me. I could get all experiment replicas for each experimental condition. The problem is that for the...
Forum: 454 Pyrosequencing 06-15-2015, 04:10 AM
Replies: 0
Views: 3,579
Posted By paumarc
estimation of the expression changes

Hello everybody,

My colleges send me its pyrosequencing results to be analysed. the data that i got is a list of averages for different experiments (conditions) for a different genes

ex
...
Forum: Bioinformatics 04-23-2015, 06:29 AM
Replies: 14
Views: 2,695
Posted By paumarc
i solved the problem, i don't know why but the...

i solved the problem, i don't know why but the files i had were incorrect
Forum: Bioinformatics 04-17-2015, 12:51 AM
Replies: 14
Views: 2,695
Posted By paumarc
problems processing bcl

i have installed bcl2fastq in our cluster, i also copied the BackupNGS directroy at the cluster there are files called as duplicati-full-signature.20150312T101755Z.vol1460.zip in it.

Now i would...
Forum: Bioinformatics 04-10-2015, 03:44 AM
Replies: 3
Views: 1,562
Posted By paumarc
we have the Ilumina NextSeq 500 and our provider...

we have the Ilumina NextSeq 500 and our provider told me to use this software

http://support.illumina.com/content/illumina-support/us/en/downloads/bcl2fastq-conversion-software-v216.html

the...
Forum: Bioinformatics 04-10-2015, 02:36 AM
Replies: 3
Views: 1,562
Posted By paumarc
Testing bcl2fast

Hello everybody!

I'm new at the NextSeq world, my lab just bought a new machine some weeks ago and now I will be responsible to set up all the environment to perform different bioinformatics...
Showing results 1 to 11 of 11

 


All times are GMT -8. The time now is 10:38 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO