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Forum: Bioinformatics 05-07-2019, 03:12 AM
Replies: 0
Views: 234
Posted By fripeki
Smile Repeatscout output

hello. I'm using repeatscout. can anyone help me explaining how to read the result produced by the command:
build_lmer_table?
It is not clear to me what does it mean this kind of result:...
Forum: Bioinformatics 04-29-2019, 01:20 PM
Replies: 40
Views: 17,574
Posted By fripeki
Hello. I know that is an old thread but I don't...

Hello. I know that is an old thread but I don't find people able to answer.
I'm running Repeatscout. I built the l-mer table called myfile.freq of myfile.fa
Can anyone tell me what do they mean...
Forum: Bioinformatics 04-24-2019, 07:45 AM
Replies: 0
Views: 254
Posted By fripeki
Repeatscout output

Hello, I have mygenome.fa and I used repeatscout to produce mygenome_repeats and then I filtered it. Now I have mygenome_repeats_filtered.fa. what is the next step? I use repeatmasker using this...
Forum: Bioinformatics 04-10-2019, 07:35 AM
Replies: 0
Views: 318
Posted By fripeki
RepeatScout generates empty files

Hello everybody
I was trying to use RepeatScout. I was following some steps to analyze my sequences.
When I used the command filtering-perl-1, it generated an empty output file .fasta.
I checked...
Forum: Bioinformatics 04-08-2019, 01:19 AM
Replies: 0
Views: 344
Posted By fripeki
RepeatScout errors

Hello everybody
I was trying to use RepeatScout. I was following some steps one by one to analyze my sequences.
Here there are the passages:

Repeatscout run: using `fname.fa`

1)...
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