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Forum: Bioinformatics 02-16-2015, 04:42 AM
Replies: 2
Views: 2,596
Posted By seversond12
Salmon and RSEM TPM estimate divergence?


I have been exploring which transcript quantification method to use for isoform level analysis. To date I have been performing gene level analysis with a STAR-htseqcounts-edgeR pipeline....
Forum: General 09-18-2014, 02:52 AM
Replies: 1
Views: 786
Posted By seversond12
EBV Genomes

Currently, I'm using the NCBI taxonomy and NCBI genomes that are tied to it to analyse pathogen genomes and reads in human samples. I am particularly interested in looking at EBV (Human herpesvirus...
Forum: Bioinformatics 09-18-2014, 02:44 AM
Replies: 2
Views: 1,597
Posted By seversond12
NCBI GTF for Pathogens

I am attempting to design software for pulling out pathogen reads from either RNA-seq or WGS sequencing of human samples. The pipeline is centred around the NCBI taxonomy database and NCBI pathogen...
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