SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 5 of 5
Search took 0.00 seconds.
Search: Posts Made By: scottdson
Forum: Bioinformatics 07-24-2014, 01:53 PM
Replies: 308
Views: 88,179
Posted By scottdson
Hi Brian, I was using version 33.04 so i'll...

Hi Brian,

I was using version 33.04 so i'll update and try this again.

Mnay thanks,

Scott
Forum: Bioinformatics 07-24-2014, 01:03 PM
Replies: 308
Views: 88,179
Posted By scottdson
Hi Brian, Thanks for releasing this tools...

Hi Brian,

Thanks for releasing this tools it's a great help. I have a set of fastq files for paired-end reads, 9 sets of paired files with around 46 million reads in each. You're tool has been...
Forum: Bioinformatics 07-03-2014, 09:26 AM
Replies: 4
Views: 1,166
Posted By scottdson
Thanks for the link GenoMax, this hard cut-off...

Thanks for the link GenoMax, this hard cut-off wasn't the most desirable option but so you're suggestion might be a very good option.
Looking back into the sample prep, the library might have...
Forum: Bioinformatics 07-03-2014, 07:37 AM
Replies: 4
Views: 1,166
Posted By scottdson
Hi Genomax, I use FastQC, and the unusual...

Hi Genomax,

I use FastQC, and the unusual things about the dataset are that on the per base quality page the box-Whisker plot tails dip below a Phred score of 28 from 135 -151 bp, and on the Kmer...
Forum: Bioinformatics 07-03-2014, 07:09 AM
Replies: 4
Views: 1,166
Posted By scottdson
Question Issue with Tophat and Bowtie2

So I've been using Tophat (running bowtie2) for various RNA-seq mapping projects and using default Tophat settings will get more than 75% mapping on first instance, but i've came across a strange...
Showing results 1 to 5 of 5

 


All times are GMT -8. The time now is 07:42 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO