Forum: Genomic Resequencing
11-18-2013, 10:52 PM
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Replies: 0
Views: 2,653
CNS file format
Hi
I got a set of file names as **.cns I am sure this contains ref and var bases along with some quality values. Please help me out to understand what all the headers.
chromosome_7 1 A...
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Forum: Bioinformatics
09-29-2013, 11:17 PM
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Replies: 1
Views: 2,584
cd-hit output clarification
Hi all,
I got an output from cd-hit-est as follows.
>Cluster 1
0 1997nt, >Locus_3753_Transcript_3/6_Confidence_0.182_Length_1997_UP10_UP11... at 208:1784:3900:5486/+/92.67%
1 ...
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Forum: Bioinformatics
09-29-2013, 11:16 PM
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Replies: 9
Views: 4,586
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Forum: Bioinformatics
07-29-2013, 01:56 AM
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Replies: 5
Views: 3,211
Dear All,
I was trying to use PAGIT - Post...
Dear All,
I was trying to use PAGIT - Post Assembly Genome Improvement Toolkit, for one of my assembly. I could not find any proper manual to explaing the steps. when I opened the dotestrun.sh...
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Forum: Bioinformatics
07-29-2013, 01:54 AM
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Replies: 1
Views: 1,420
PAGIT input files
Dear All,
I was trying to use PAGIT - Post Assembly Genome Improvement Toolkit, for one of my assembly. I could not find any proper manual to explaing the steps. when I opened the dotestrun.sh...
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Forum: Bioinformatics
07-24-2013, 11:02 PM
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Replies: 5
Views: 4,092
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Forum: Bioinformatics
07-23-2013, 09:02 PM
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Replies: 19
Views: 3,308
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Forum: De novo discovery
05-28-2013, 08:52 AM
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Replies: 2
Views: 1,668
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Forum: Illumina/Solexa
05-28-2013, 08:42 AM
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Replies: 4
Views: 1,742
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Forum: Bioinformatics
04-09-2013, 11:04 PM
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Replies: 10
Views: 3,697
Hey all,
I am looking for the transcripts...
Hey all,
I am looking for the transcripts which are extended or clipped in either 5' or 3' end. Could anyone help me with this..?? What classcode would be helpful in understanding this...
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Forum: De novo discovery
04-01-2013, 02:29 AM
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Replies: 15
Views: 6,070
Hello Rayanc,
I appreciate the work what you...
Hello Rayanc,
I appreciate the work what you have done on minia. If you can mention about the platform on what we can use minia (illumina or SOLiD, etc) also it can handle colorspace data..??
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Forum: Bioinformatics
04-01-2013, 02:18 AM
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Replies: 13
Views: 5,835
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Forum: Bioinformatics
02-26-2013, 01:20 AM
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Replies: 17
Views: 8,830
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Forum: Introductions
08-26-2011, 02:02 AM
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Replies: 1
Views: 2,136
Rank In Soap denovo
Dear all,
I am trying to use soap denovo tool for my large data assembly.
I have some doubts regarding that..
what is rank in config file
can we run multiple Kmers in a single run..??
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