Forum: Bioinformatics
07-21-2016, 11:48 AM
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Replies: 4
Views: 5,932
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Forum: Bioinformatics
04-08-2015, 09:50 AM
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Replies: 1
Views: 1,170
Evaluate coverage of specific motifs
Is there a method out there that would allow me to determine whether a particular sequence motif (DNA) has adequate sequencing depth of coverage across a genome? What I am interested in seeing is...
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Forum: Genomic Resequencing
02-02-2015, 11:45 AM
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Replies: 1
Views: 3,562
WGS batch effects
Hi All,
I'm relatively new to whole genome sequencing, and have a background in 16S based typing of bacteria using NGS. I am collecting data on a set of closely related organism, using illumina,...
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Forum: Bioinformatics
01-20-2015, 11:05 AM
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Replies: 4
Views: 1,434
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Forum: Bioinformatics
01-20-2015, 08:44 AM
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Replies: 4
Views: 1,434
Extracting Regions of Zero Coverage
I am looking for a quick and simple way to identify regions of zero coverage in a sequencing set. My ultimate goal is to try and determine whether there might be genomic features which contribute to...
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Forum: Bioinformatics
10-10-2014, 12:12 PM
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Replies: 0
Views: 1,244
EdgeR - trim DGEList by data feature
Greetings!
I am using EdgeR to perform analysis on a large dataset. For some of my questions, I am interested in looking only at a subset of my data, based on a specific field in the dataset. Is...
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Forum: Bioinformatics
08-18-2014, 06:20 AM
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Replies: 3
Views: 1,330
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Forum: General
08-15-2014, 11:17 AM
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Replies: 2
Views: 1,254
Anyone know a good R course?
Greetings!
Does anyone know of any really amazing R-based statistics courses for users familiar with the language basics, but hoping to hone skills? Course would preferably be online and free/not...
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Forum: Bioinformatics
08-15-2014, 11:11 AM
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Replies: 3
Views: 1,330
EdgeR - default offset
Greetings R aficionados!
I was wondering whether anyone could tell me what the default offset is that is used in the glmFit function of EdgeR? Is it either the library size, or...
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