SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 7 of 7
Search took 0.00 seconds.
Search: Posts Made By: mycorr10
Forum: Bioinformatics 02-08-2012, 03:40 AM
Replies: 10
Views: 3,062
Posted By mycorr10
getting a usable alignment out of exonerate

Though I posted a separate thread for this I've gotten no response there so I'm asking here. As of now I've found exonerate to be useful in aligning ests to genomic dna and the output is supposed to...
Forum: Bioinformatics 02-06-2012, 01:50 PM
Replies: 0
Views: 2,334
Posted By mycorr10
Question Help with Exonerate output

I'm doing some cdna to genomic dna alignments with exonerate but am having trouble parsing the output- not very good at that sort of thing.
I would like the gff and alignment as separate files. In...
Forum: Bioinformatics 01-16-2012, 06:26 AM
Replies: 10
Views: 3,062
Posted By mycorr10
Oh that does look likely - thanks.

Oh that does look likely - thanks.
Forum: Bioinformatics 01-16-2012, 04:22 AM
Replies: 10
Views: 3,062
Posted By mycorr10
Thanks I will check that out. A day or two ago...

Thanks I will check that out. A day or two ago someone suggested an alignment tool called Spicey and then they promptly left town. I can't find a reference or website for it but when they get back to...
Forum: Bioinformatics 12-05-2011, 05:52 AM
Replies: 10
Views: 3,062
Posted By mycorr10
Yes, I like exonerate but since my genome isn't...

Yes,
I like exonerate but since my genome isn't assembled i don't get a convenient multiple sequence alignment out of it. I often have two or three long genome contigs that align to my EST and the...
Forum: Bioinformatics 12-05-2011, 05:18 AM
Replies: 10
Views: 3,062
Posted By mycorr10
I've already used blat to find the appropriate...

I've already used blat to find the appropriate genome contigs that match the EST but it doesn't fit my needs. What i need is a program that does multiple sequence alignment capable of incorporating...
Forum: Bioinformatics 12-05-2011, 03:23 AM
Replies: 10
Views: 3,062
Posted By mycorr10
Settings for cap3 assembly of cDNA to genomic data

Hello,
Sorry if there has been an answer to this elsewhere- i couldn't find it.
I've been given the task of extending some short ESTs with pieces of genome sequence that have been accumulated for...
Showing results 1 to 7 of 7

 


All times are GMT -8. The time now is 07:41 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO