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Search: Posts Made By: Sherry
Forum: Bioinformatics 09-21-2011, 06:58 AM
Replies: 12
Views: 6,967
Posted By Sherry
Will try. Thanks!

Will try. Thanks!
Forum: Bioinformatics 02-07-2011, 07:04 AM
Replies: 0
Views: 2,045
Posted By Sherry
Cufflinks crashes on BAM output from TopHat

Hi,

I am trying to run Cufflinks (version 0.9.3) on BAM output from TopHat (1.1.1). Unfortunately it crashes in the middle of running. In most cases it stops at inspecting reads step at around...
Forum: Bioinformatics 01-03-2011, 01:09 PM
Replies: 0
Views: 1,605
Posted By Sherry
Tophat warning message

Hi,

I am getting a warning message as "'import site' failed; use -v for traceback". It doesn't seem to stop the program.

Any help will be appreciated,

Sherry
Forum: Bioinformatics 10-14-2010, 11:51 AM
Replies: 12
Views: 6,967
Posted By Sherry
Thumbs up Thanks! It worked! It gave a minor error...

Thanks! It worked!

It gave a minor error message:
cufflinks: /usr/lib64/libz.so.1: no version information available (required by cufflinks)

but this doesn't seem to affect the running.
...
Forum: Bioinformatics 10-14-2010, 10:55 AM
Replies: 12
Views: 6,967
Posted By Sherry
thanks! I will give it a try!

thanks! I will give it a try!
Forum: Bioinformatics 10-14-2010, 10:27 AM
Replies: 12
Views: 6,967
Posted By Sherry
It's a quad 4x4 processors, 64 bit machine...

It's a quad 4x4 processors, 64 bit machine running Red Hat Enterprise Linux Server release 5.3
Forum: Bioinformatics 10-14-2010, 10:09 AM
Replies: 12
Views: 6,967
Posted By Sherry
Cufflinks error message on test data

Hi,

I compiled cufflinks after installing samtools and the boost libraries. Everything went fine. However, when I tested using cufflinks test_data.sam, the following error message appears.
...
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