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Forum: Bioinformatics

01-21-2019, 11:23 AM

Replies: 0

Looking for the sequence of a particular transcript from sequencing data

Views: 1,644

Posted By the_august

Looking for the sequence of a particular transcript from sequencing data

First, let me tell you that I'm very new to the field of NGS and not much familiar with the set of tools commonly used for NGS data processing. However, I'm not new to Bioinformatics, and have quite...

Forum: General

11-20-2014, 05:43 AM

Replies: 3

Time required to complete a transcriptom to Genome mapping project

Views: 1,757

Posted By the_august

Many thanks for your answer. I'll be working with...

Many thanks for your answer. I'll be working with Mouse genome and a particular mouse tissue transcriptome.

Thanks

Forum: General

11-20-2014, 04:52 AM

Replies: 3

Time required to complete a transcriptom to Genome mapping project

Views: 1,757

Posted By the_august

Time required to complete a transcriptom to Genome mapping project

Hello All,
I'm a new comer to NGS. However, I have years of experience in other field of Bioinformatics and I'm well
versed in scripting/programming. Besides, I've experience in general sequence...

Forum: Bioinformatics

10-07-2014, 12:03 PM

Replies: 1

Looking for Mouse and Human Neuron RNA seq. data

Views: 1,239

Posted By the_august

Looking for Mouse and Human Neuron RNA seq. data

Hello All,
Can somebody point to raw Transcriptome sequence data for mouse and Human neuron? I wish to assemble that using TopHat.
Thanks

Forum: Bioinformatics

01-29-2013, 07:49 PM

Replies: 3

protein coding region of transcript assembled by reference

Views: 1,173

Posted By the_august

Hi Kennels, I guess the trinity method...

Hi Kennels,

I guess the trinity method you've described is to get transcript for De-novo assembled sequences.

I'm looking for methods that can predict protein coding regions from reference...

Forum: Bioinformatics

01-23-2013, 10:10 AM

Replies: 3

protein coding region of transcript assembled by reference

Views: 1,173

Posted By the_august

protein coding region of transcript assembled by reference

Hello All,

I've got some sequences of RNA transcript made by 454 sequencing and assembled using sequences from a reference genome. I have the sequence of the transcript and the corresponding...

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