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Forum: Bioinformatics 11-06-2013, 12:54 PM
Replies: 0
Views: 907
Posted By sequencer_lee
open source code for WGS ancestry painting?

Hi
Is anyone aware of open source code suitable for generating an ancestry paint of the autosomes, kind of analogous to what 23&me does, that can be applied to a whole genome sequence?
Thanks
Forum: Academic/Non-Profit Jobs 02-25-2009, 04:30 PM
Replies: 2
Views: 1,684
Posted By sequencer_lee
Hey Brent! Sounds kind of like my current job...

Hey Brent!
Sounds kind of like my current job :)
Miss ya,
Lee
Forum: Events / Conferences 02-20-2009, 03:24 PM
Replies: 15
Views: 9,741
Posted By sequencer_lee
Ditto--they helped me to prepare a discussion...

Ditto--they helped me to prepare a discussion group summary of the conference.
Forum: Bioinformatics 08-01-2008, 12:36 PM
Replies: 0
Views: 49,429
Posted By sequencer_lee
reference set for analyzing illumina DpnII tags?

Hi
Anyone know where I can find a good squashed genome equivalent for running ANALSIS:Eland_tag on a DPNII-cut library?

How do you all typically do this?

Please advise and thanks,
Lee
Forum: Illumina/Solexa 07-11-2008, 11:57 AM
Replies: 7
Views: 3,256
Posted By sequencer_lee
Thanks, guys--the plot was for the PhiX control. ...

Thanks, guys--the plot was for the PhiX control. Tech support thinks we had a focussing issue. Anyway, it didn't happen on the next run.
Forum: Illumina/Solexa 05-27-2008, 05:36 PM
Replies: 7
Views: 3,256
Posted By sequencer_lee
That's weird--I can see it. You could try...

That's weird--I can see it.
You could try clicking this link:
img144.imageshack.us/img144/734/picture3wz7.png
Forum: Illumina/Solexa 05-27-2008, 04:19 PM
Replies: 7
Views: 3,256
Posted By sequencer_lee
Anyone seen an intensity plot like this?

This is the PhiX lane--anyone seen bases diverge like this? What would cause this? Thanks

http://img144.imageshack.us/img144/734/picture3wz7.png
Forum: Personalized Genomics 05-23-2008, 01:30 PM
Replies: 0
Views: 2,851
Posted By sequencer_lee
Personal genome meeting this Oct at CSH

October 9-12, abstracts due July 16
http://meetings.cshl.edu/meetings/person08.shtml
Forum: Introductions 05-23-2008, 10:34 AM
Replies: 0
Views: 1,434
Posted By sequencer_lee
Newbie from Seattle

Hi everyone
I discovered the existence of this place this morning from a post in Rumor Mill.
We currently have a solexa in our organization and are likely to expand in next gen over the next few...
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