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Search: Posts Made By: Llopis
Forum: Bioinformatics 06-01-2015, 09:37 AM
Replies: 8
Views: 2,117
Posted By Llopis
Hi ersgupta, I think I did solve it, i'm...

Hi ersgupta,

I think I did solve it, i'm sorry but I can't remember, . I couldn't find anything on my notes... sorry.
Forum: Bioinformatics 04-02-2014, 02:34 AM
Replies: 8
Views: 2,117
Posted By Llopis
The type I am using this exon data like this: ...

The type I am using this exon data like this:

Note the inversion of the genes in the complement sequence

This exon file comes from a NCBI gene features file in fasta format, I am not sure that...
Forum: Bioinformatics 04-01-2014, 08:00 AM
Replies: 8
Views: 2,117
Posted By Llopis
Oh, I see, so the problem it was not the make but...

Oh, I see, so the problem it was not the make but my permissions. I solved that (Thanks TiborNagy and GenoMax) I run the program with: perl ./trainGlimmerHMM sequence.mfasta trainingdata.txt But I...
Forum: Bioinformatics 04-01-2014, 02:56 AM
Replies: 8
Views: 2,117
Posted By Llopis
Post make and trainGlimmerHMM

I have a problem to train my data with GlimmerHMM. The manual says:


But when I run make in this directory (I am not the administrator but I have rights to execute and read), I get this: make:...
Forum: Wiki Discussion 02-04-2014, 02:34 AM
Replies: 12
Views: 22,757
Posted By Llopis
Maybe it is not the real place to answer, but...

Maybe it is not the real place to answer, but while on a project about creating a pipeline I found your Wiki Tool page and it was great but I found some related tools not listed there.
I would like...
Forum: Bioinformatics 02-04-2014, 02:32 AM
Replies: 1
Views: 913
Posted By Llopis
Post A new technology to sequence

I recently read about Quantum Biosystem (http://www.quantumbiosystems.com/feature/tech.html?lang=en) which identifies
They have just sequenced the first nucleotides and are available on their web...
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