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Forum: Bioinformatics 12-14-2015, 12:32 PM
Replies: 11
Views: 2,353
Posted By antifolate
Thanks for the help.

Thanks for the help.
Forum: Bioinformatics 12-14-2015, 12:01 PM
Replies: 11
Views: 2,353
Posted By antifolate
Thanks Brian. I have a question about edit...

Thanks Brian. I have a question about edit distance: if I allow say editdistance=2, would it catch potentially informative bases after the found adapter? For example, if I have the adapter "ADAPTER"...
Forum: Bioinformatics 12-13-2015, 07:04 PM
Replies: 11
Views: 2,353
Posted By antifolate
How do you specify error rate in BBduk adapter trimming?

Hello,

I'm using BBduk to trim adapter sequences from my reads. From the help manual I see the editdistance and hammingdistance options, but they set a fixed number of mismatches, independent of...
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