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Search: Posts Made By: unionicola
Forum: Bioinformatics 01-10-2020, 09:08 AM
Replies: 2
Views: 1,511
Posted By unionicola
Thank you for your help. Previously, I was...

Thank you for your help.

Previously, I was getting the following output results summary:

Input: 29978820 reads 2188453860 bases.
KTrimmed: 135110 reads...
Forum: Bioinformatics 01-09-2020, 02:40 PM
Replies: 2
Views: 1,511
Posted By unionicola
bbduk and removing adapters of varying length

I am analyzing some published Tn-seq data. There appears to be residual transposon sequence in the reads, preventing alignment. Unfortunately, this sequence is of variable length. Here are some...
Forum: Bioinformatics 02-02-2009, 03:20 PM
Replies: 99
Views: 42,969
Posted By unionicola
MapView looks great, but I'm having trouble...

MapView looks great, but I'm having trouble loading data into it. I used MVFMaker tool and loaded in the reference genome I used to align my data to and the .map file that I obtained from MAQ output...
Forum: Bioinformatics 02-01-2009, 03:55 PM
Replies: 1
Views: 2,142
Posted By unionicola
Maqview Reference Sequence

Hi,

This is my first post. I have used MAQ to align new sequences to a reference genome. However, I am having trouble using maqview to locate the alignments on the reference genome and I am...
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