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Search: Posts Made By: danwiththeplan
Forum: Bioinformatics 02-03-2016, 01:52 PM
Replies: 8
Views: 3,396
Posted By danwiththeplan
Thumbs up Thanks for the feedback! To answer your...

Thanks for the feedback! To answer your questions:

1) For future releases, we will include citation information, but for now, please cite:

Jones,D., Stuckey, A., and Fan, V. (2016)....
Forum: Bioinformatics 01-25-2016, 12:45 PM
Replies: 8
Views: 3,396
Posted By danwiththeplan
Great, thanks, this is now fixed. Prettier plots...

Great, thanks, this is now fixed. Prettier plots (using ggplot2) are definitely a plan for the near future. Hoping to get publication-level plots that can be generated on the fly. To avoid spamming...
Forum: Bioinformatics 01-25-2016, 11:40 AM
Replies: 8
Views: 3,396
Posted By danwiththeplan
Hi, thanks for your reply. I'm not able to...

Hi, thanks for your reply. I'm not able to replicate this error. If you mean this error:

error in evaluating the argument 'object' in selecting a method for function 'expressionPlot': Error in...
Forum: Bioinformatics 01-24-2016, 05:50 PM
Replies: 8
Views: 3,396
Posted By danwiththeplan
shiny_cuffdiff: On-the-fly interrogation and plotting of gene expression results

Hi all. I'd like to introduce the community to shiny_cuffdiff

http://nzgl.github.io/shiny_cuffdiff/

Put simply, this code uses the outputs of the Tuxedo workflow (Tophat2 > Cufflinks >...
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