Forum: Bioinformatics
06-27-2018, 02:07 AM
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Replies: 0
Views: 682
identify copies of long repeats
Hi,
I have a question maybe someone can point me where to start looking for now it is still theoretical.
I have a yeast genome sequences by illumina paired end and I know a typical sequence of...
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Forum: General
10-07-2011, 05:32 AM
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Replies: 5
Views: 6,845
use paste
PASTE(1) BSD General Commands Manual PASTE(1)
NAME
paste -- merge corresponding or subsequent lines of files
SYNOPSIS
paste [-s] [-d list] file ......
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Forum: General
10-06-2011, 11:27 AM
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Replies: 0
Views: 1,687
Dindel SAM/BAM format - viewing with IGV
Hello!
I would like to get the SAM or BAM files of the events I got in the variantCalls.VCF final file. I use --processRealignedBA and then screen the bam files for the ones with the relevant...
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Forum: Bioinformatics
06-23-2011, 07:37 AM
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Replies: 1
Views: 2,301
dindel output
Hello All,
I run Dindel and now I am trying to understand the output. I did not find an example describing each column in the output.
Can someone please point me to the right place or help me...
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Forum: Bioinformatics
05-25-2011, 01:26 PM
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Replies: 3
Views: 1,733
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Forum: Bioinformatics
05-23-2011, 08:40 AM
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Replies: 3
Views: 1,733
1000 genomes - a beginner question
Hello,
First, thank you for your time!
I work on yeast NGS. I like to run an analysis based on the 1000 genomes.
What kind of computer/facility I need?
I would like to be able to analyze...
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Forum: Genomic Resequencing
07-29-2010, 01:01 PM
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Replies: 0
Views: 2,467
pileup format- what is ^F
Hello
I am parsing the the read bases column of pileup format (bwa & samtools). Please help me to figure out how to get the base appear in the beginning of the read?
Example:...
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Forum: Bioinformatics
06-11-2010, 09:50 AM
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Replies: 0
Views: 1,926
samtools rm ambiguous alignment
Hi,
I am new here, glad I find this place.
Am I right that "samtools view -q 1" should remove all bwa will ambiguous alignments ? (since BWA ambiguous alignment should have MAPQ=0)
Thanks.
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