Forum: Bioinformatics
08-23-2012, 03:38 AM
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Replies: 0
Views: 1,562
GEO as a broker for the SRA
Hello,
We have been told that GEO is a broker for the SRA – that if datasets are submitted to GEO, then GEO will submit the appropriate data and metadata to SRA.
our questions are:
- is that the...
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Forum: Bioinformatics
08-23-2012, 03:28 AM
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Replies: 0
Views: 1,277
Metadata for clinical datasets in SRA
Hello,
The SRA article in NAR (http://www.oxfordjournals.org/nar/database/summary/1456) states:
It is to be noted that data requiring authorized access, such as human genome sequenced under...
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Forum: Bioinformatics
08-23-2012, 03:25 AM
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Replies: 0
Views: 865
The Secondary Data field in PubMed
We have retrieved a set of PubMed articles using NGS search terms. In these Hello,
we find links from some PubMed entries to Genbank and to GEO. These links are in the secondary data field, but they...
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Forum: Bioinformatics
08-23-2012, 03:23 AM
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Replies: 1
Views: 999
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Forum: Bioinformatics
08-23-2012, 03:21 AM
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Replies: 4
Views: 3,059
SRA metadata structure
Hello,
We know from the SRA article in NAR that the SRA metadata model has 6 objects (http://www.oxfordjournals.org/nar/database/summary/1456)
i. Study – high level info e.g. goals of the study,...
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Forum: Service Providers
08-13-2012, 08:44 AM
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Replies: 3
Views: 3,345
NGS laboratories, not yet in OmicsMaps
Hello everybody,
I am a research assistant working on a project concerning NGS machines. Could You please post the information (name and/or location) of the clinical centers, commercial...
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