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Forum: Bioinformatics 08-23-2012, 03:38 AM
Replies: 0
Views: 1,562
Posted By kovaliuk
GEO as a broker for the SRA


We have been told that GEO is a broker for the SRA that if datasets are submitted to GEO, then GEO will submit the appropriate data and metadata to SRA.
our questions are:
- is that the...
Forum: Bioinformatics 08-23-2012, 03:28 AM
Replies: 0
Views: 1,277
Posted By kovaliuk
Metadata for clinical datasets in SRA

The SRA article in NAR ( states:
It is to be noted that data requiring authorized access, such as human genome sequenced under...
Forum: Bioinformatics 08-23-2012, 03:25 AM
Replies: 0
Views: 865
Posted By kovaliuk
The Secondary Data field in PubMed

We have retrieved a set of PubMed articles using NGS search terms. In these Hello,
we find links from some PubMed entries to Genbank and to GEO. These links are in the secondary data field, but they...
Forum: Bioinformatics 08-23-2012, 03:23 AM
Replies: 1
Views: 999
Posted By kovaliuk
2. PubMed ids in SRA and GEO [and other repositories?]

We have been exploring the metadata fields in SRA and GEO. We have observed a lot of PubMed ids in SRA and GEO. (But not the reverse, i.e., the corresponding PubMed publications do not...
Forum: Bioinformatics 08-23-2012, 03:21 AM
Replies: 4
Views: 3,059
Posted By kovaliuk
SRA metadata structure


We know from the SRA article in NAR that the SRA metadata model has 6 objects (
i. Study high level info e.g. goals of the study,...
Forum: Service Providers 08-13-2012, 08:44 AM
Replies: 3
Views: 3,345
Posted By kovaliuk
NGS laboratories, not yet in OmicsMaps

Hello everybody,

I am a research assistant working on a project concerning NGS machines. Could You please post the information (name and/or location) of the clinical centers, commercial...
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