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Forum: Bioinformatics

05-20-2010, 09:24 AM

Replies: 2

using bfast for mapping bacterial and viral genomes

Views: 1,623

Posted By kakar_nipun

using bfast for mapping bacterial and viral genomes

Hi All

I was intending to map SOLID reads to the viral and bacterial genomes, and was thinking if i can use the same indices as mentioned in the Bfast manual, or do i need to create new ones?
...

Forum: Bioinformatics

03-01-2010, 10:33 AM

Replies: 1

Bfast query

Views: 2,352

Posted By kakar_nipun

Bfast query

Hi

I was trying to create indices for the reference genome using bfast 0.6.3.c and also trying to convert the reads.

Convert the reference:
bfast-0.6.3c/bfast/bfast fasta2brg -f microbial.fa
...

Forum: Bioinformatics

12-18-2009, 08:07 AM

Replies: 2

Calling indels from samtools-pileup

Views: 4,126

Posted By kakar_nipun

Calling indels from samtools-pileup

Hi Guys

I was not clear on the samtools indel calling documentation, and therefore wanted to clarify a few things. I observe the following cases in my samtools-indel calling output.
...

Showing results 1 to 3 of 3

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