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Search: Posts Made By: Dave-bo_Baggins
Forum: Bioinformatics 05-15-2013, 12:54 PM
Replies: 84
Views: 23,926
Posted By Dave-bo_Baggins
I was troubleshooting and looking into the error...

I was troubleshooting and looking into the error messages and I thoughts Id share some progress, well I hope progress

Looking at the error statement again

g++ -Wall -Wno-strict-aliasing -g...
Forum: Bioinformatics 05-15-2013, 11:07 AM
Replies: 84
Views: 23,926
Posted By Dave-bo_Baggins
Hey GenoMax, I re-issued the compile...

Hey GenoMax,

I re-issued the compile statement this time removing the trailing slashes.
and everything compiles no errors.

./configure --prefix=/home/dave/Desktop/cufflinks-2.1.1...
Forum: Bioinformatics 05-14-2013, 04:00 PM
Replies: 84
Views: 23,926
Posted By Dave-bo_Baggins
Genomax Hope you are doing well. I have been...

Genomax

Hope you are doing well. I have been trying to install on my home computer. Today I was back at my work station. I reinstalled boost in the /usr/local all seemed well. When I went to my...
Forum: Bioinformatics 05-14-2013, 06:55 AM
Replies: 84
Views: 23,926
Posted By Dave-bo_Baggins
Hey GenoMax Thanks for you responses I...

Hey GenoMax

Thanks for you responses

I deleted my previous boost installation and stared over again:

./bootstrap.sh --prefix=home/mrmary/ngs/applications/

Building Boost.Build engine...
Forum: Bioinformatics 05-13-2013, 05:39 PM
Replies: 84
Views: 23,926
Posted By Dave-bo_Baggins
GenoMax When I entered the the bjam command...

GenoMax

When I entered the the bjam command I got these warnings:
warning: mismatched versions of Boost.Build engine and core
warning: Boost.Build engine (bjam) is 03.1.19
warning: Boost.Build...
Forum: Bioinformatics 05-13-2013, 03:49 PM
Replies: 84
Views: 23,926
Posted By Dave-bo_Baggins
GenoMax I checked paths and there are no...

GenoMax

I checked paths and there are no "include" or "lib" directories.(there is a libs directory) I will reinstall and rebuild the boost, and keep an eye out for an errors that may come up...
Forum: Bioinformatics 05-13-2013, 02:56 PM
Replies: 84
Views: 23,926
Posted By Dave-bo_Baggins
Hello Again GenoMax I decided to go over my...

Hello Again GenoMax

I decided to go over my configure statement again, in particularly the boost related commands:
--with-boost=/usr/local/boost_1_53_0/ ...
Forum: Bioinformatics 05-13-2013, 01:31 AM
Replies: 84
Views: 23,926
Posted By Dave-bo_Baggins
Hello pengchy Thanks for the reply that...

Hello pengchy

Thanks for the reply that cleared up things a lil bit. I have .hpp files at the following locations:

/usr/local/boost_1_53_0/boost
/ngs/applications/boost_1_53_0/boost

when I...
Forum: Bioinformatics 05-13-2013, 12:15 AM
Replies: 84
Views: 23,926
Posted By Dave-bo_Baggins
Hello GenoMax Thanks so much for your...

Hello GenoMax

Thanks so much for your feedback. Let me answer your question:


I have Boost installed in the home directory: $HOME/ngs/applications...
Forum: Bioinformatics 05-12-2013, 12:28 PM
Replies: 84
Views: 23,926
Posted By Dave-bo_Baggins
Thanks Pengchy for answering I really appreciate...

Thanks Pengchy for answering I really appreciate it

This is what I tried again:

./configure
--prefix=/home/mrmary/ngs/applications/cufflinks-2.1.1/ ...
Forum: Bioinformatics 05-12-2013, 03:13 AM
Replies: 84
Views: 23,926
Posted By Dave-bo_Baggins
I have been working on trying to build cufflinks...

I have been working on trying to build cufflinks for the past few days and so far I keep getting stuck with the same error

checking for boostlib >= 1.47.0... configure: error: We could not detect...
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