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Forum: Bioinformatics 08-29-2013, 07:12 AM
Replies: 4
Views: 3,417
Posted By joseph.troy
I spent yesterday reading the bowtie 2 manual...

I spent yesterday reading the bowtie 2 manual trying to figure out how to limit the output to alignments with no more than 1 mismatch. (in bowtie 1 I was able to limit output to those with no more...
Forum: RNA Sequencing 03-25-2013, 04:48 PM
Replies: 6
Views: 2,529
Posted By joseph.troy
Question about removing the GTF file

Thanks all for the information! I'm having the same problem. I tried removing the GTF file, but perhaps did it wrong (see with and without below). If possible can you share your command lines...
Forum: Bioinformatics 02-25-2013, 03:07 PM
Replies: 8
Views: 7,085
Posted By joseph.troy
Hello, Did you find any answers to your...

Hello,

Did you find any answers to your couldn't find fasta record for 'chr1_random' i've run into the same problem.

Thank you

-Joe
Forum: Introductions 10-28-2012, 10:46 AM
Replies: 0
Views: 670
Posted By joseph.troy
Hello

Hello all,

I'm new to bioinformatics and just starting a PhD program at the University of Illinois in Urbana. One of my first project is learning Galaxy and using RNAseq data.
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