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Forum: De novo discovery 01-09-2014, 10:15 AM
Replies: 3
Views: 2,270
Posted By joeseki
De Novo Transcriptome Assembly from Kmers only

Background:

I have RNA-Seq data from 8 time points comparing study to control. Each sample has been processed one sample per lane. I do not trust the reference sequence. What I'm interested in...
Forum: Bioinformatics 08-28-2013, 07:56 AM
Replies: 0
Views: 1,055
Posted By joeseki
Myrna Jar file contents -- What's in un and ui directory?

I'm trying to reconstruct the jar reference for sus Scrofa by reverse engineering the scripts provided by Myrna. I'm not good enough at R to understand what the ui and un directory are supposed to...
Forum: Bioinformatics 08-22-2013, 07:33 AM
Replies: 0
Views: 948
Posted By joeseki
Myrna options

I'm new to Myrna and trying to figure out how I can use an aligner other than bowtie when executing Myrna. Is this even possible? If it is how would one do that?

background: I don't trust the...
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