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Forum: Bioinformatics

03-30-2011, 12:03 PM

Replies: 1

pileup output different using Maq and Samtools commands

Views: 1,849

Posted By mr_boourns

pileup output different using Maq and Samtools commands

Dear all,

We are trying to detect allelic specific expression with RNA-seq data by mapping against a masked genome (with the reference allele substituted for N's at known SNP positions). We have...

Forum: Bioinformatics

04-27-2010, 08:23 AM

Replies: 0

maq mapcheck

Views: 1,058

Posted By mr_boourns

maq mapcheck

Hi all,

I was wondering does anyone have any experience using maq mapcheck to estimate the different substitution rates by substitution type. After an RNAseq analysis I get the following as the...

Showing results 1 to 2 of 2

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